Set Up for Single-Cell Sequencing Success
Save Time and Budget Without Sacrificing Quality
ddSEQ Droplet Partitioning System
Think high-quality single-cell library preparation is beyond your lab’s reach? Think again. Think ddSEQ.
Bio-Rad’s ddSEQ™ Single Cell Isolator leverages proven droplet technology to provide reliable and streamlined workflows for single-cell library preparation. This compact system uses disposable cartridges for fast encapsulation — processing thousands of cells in under 5 minutes.
The ddSEQ Single-cell NGS Library Prep Kits provide high-quality data, streamlined one-day workflows with convenient safe stopping points, as well as batch sample processing using Bio-Rad's open-source pipeline, Omnition Analysis Software for both 3' RNA-Seq and ATAC-Seq analysis.
scRNA-Seq
Watch the video for an overview of the ddSEQ Single-Cell Isolator and ddSEQ Single-Cell 3’ RNA-Seq Kit.
Access High-Quality Transcriptome Profiling & Expand Your Single-Cell Insights
Lower the barriers to incorporating single-cell 3’ RNA-seq into your research or to conducting more experiments. The ddSEQ Single Cell Isolator and ddSEQ Single-Cell 3’ RNA-Seq Kit deliver a streamlined workflow and high performance, even accommodating larger cell sizes (up to 50 µm).
Key Applications:
- Revealing expression profiles of individual cells
- Identifying rare cell populations
- Analyzing heterogeneous cell populations
scATAC-Seq
Watch the video to learn more on the power and potential of single-cell ATAC-seq.
Explore the Epigenomic Landscape of Single Cells with the ATAC You Seq
Bio-Rad's ddSEQ Single-Cell ATAC-seq Library Prep Kit, coupled with the ddSEQ Single Cell Isolator, provides a simple and cost-efficient solution. Generate high-resolution genome-wide data and achieve sensitive profiling of chromatin accessibility.
Key Applications:
- Identifying cell types and heterogeneity
- Studying gene regulation and enhancer activity
- Exploring cellular differentiation and development
Conferences
Visit us at 2025 Scientific Conferences
Visit the Bio-Rad booth at the following 2025 scientific conferences to see a ddSEQ System.
- Festival of Genomics & Biodata – Jan 29-30, London, UK
- AACR – April 25-30, Chicago, IL
- ISMRC – May 7-9, Nice, France
- ESHG – May 24-27, Milan, Italy
- EACR – June 16-19, Lisbon, Portugal
- Multiomics in Precision Medicine – June 23-24, Philadelphia, PA
- Festival of Genomics & Biodata – June 24-25, Boston, MA
- Advances in Single Cell and Spatial Biology – Sept 11-12, USA
- ASHG – Oct 14-18, Boston, MA
- AMP – Nov 11-15, Boston, MA
- NextGen Omics & Data – Nov 13-14, London, UK
- Society for Neuroscience – Nov 15-19, San Diego, CA
Resources
From Transcriptomes to Epigenomes: Introduction to Single-Cell RNA-seq and Single-Cell ATAC-seq
Watch the webinar to learn:
- The basics and evolution of single-cell technologies
- Step-by-step workflows for scRNA-seq and scATAC-seq
- How to analyze single-cell data for transcriptomic and epigenomic insights
- Example applications across diverse research areas
Single-cell technology has transformed biological research by enabling the analysis of individual cells, providing unique insights into cellular heterogeneity and gene regulation. In this webinar, we explain two essential single-cell applications — single-cell RNA sequencing (scRNA-seq), which enables you to analyze gene expression at the single-cell level and single-cell ATAC sequencing (scATAC-seq), which enables you to uncover gene regulatory mechanism by analyzing individual cell's chromatic accessibility across the entire genome.
Discover how these techniques can empower your research and help you explore cellular function, heterogeneity, and gene expression!
ddSEQ Resources
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Featured ddSEQ Publications
Explore how ddSEQ technology has been utilized in single-cell research across various fields in this curated publication list.
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ddSEQ Sample Preparation Guide
Access guidelines and tips for optimal cell suspension preparation in ddSEQ single-cell assays.
3’ RNA-Seq Resources
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ddSEQ 3’ RNA-Seq Flyer
Learn more about the ddSEQ scRNA-Seq Kit workflow and performance metrics in our detailed flyer.
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ddSEQ Single-Cell 3' RNA-Seq Kit Protocol
Access step-by-step instructions for creating sequencing-ready scRNA libraries.
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Nuclei Isolation Protocol for ddSEQ Single-Cell 3’ RNA-Seq Kit
Validated workflow for isolating nuclei for single-nucleus RNA sequencing using Bio-Rad's ddSEQ Single-Cell 3' RNA-Seq Kit, enabling high-quality profiling of complex tissue samples.
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Performance Evaluation of Single-Cell RNA-Seq with the ddSEQ™ Single-Cell 3' RNA-Seq Kit and Complete Genomics DNBSEQ-T1+RS Sequencer
Explore high-throughput single-cell RNA sequencing with enhanced gene detection and workflow efficiency using Complete Genomics technology.
ATAC-Seq Resources
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ddSEQ ATAC-Seq Kit Flyer
Learn more about the scATAC-Seq Kit workflow and performance metrics in our detailed flyer.
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ddSEQ Single-Cell ATAC-Seq Kit Protocol
Access step-by-step instructions for creating sequencing-ready scATAC libraries.
Product Information
Cloud-based Analysis
SeqSense
SeqSense Cloud is a free, easy-to-use, cloud-based solution for analyzing and visualizing next-generation sequencing (NGS) data produced using Bio-Rad library prep kits
