SEQuoia RiboDepletion Kit
Retain rare transcripts, and get the most from your sequencing
samples with the SEQuoia RiboDepletion Kit.
On This Page
|SeqSense NGS Data Analysis Options||SEQuoia and SeqSense NGS Data Analysis Workflow||NGS Data Analysis Resources||Related Products|
SeqSense NGS Data Analysis is a purpose-built workflow for analyzing and visualizing the next-generation sequencing (NGS) data produced using the SEQuoia Complete Stranded RNA Library Prep Kit.
SeqSense NGS Data Analysis Software Options
SeqSense Analysis is available in two options to work online, as a web application, or deployed locally, using your own infrastructure, through a Docker container. Both versions use FASTQ files as input for secondary analysis, using the same underlying pipeline, and can produce BAM files, count matrices, and reports as output for tertiary analysis.
SeqSense Analysis Toolkit Docker Container
Downloadable Docker container with
command line scripts and libraries.
Download SeqSense Docker Container
SeqSense Analysis Solution Web App
The SeqSense Web Application allows you to view,
manage, and analyze your FASTQ sample files online.
Use the SeqSense Web App Use the SeqSense Web App
SeqSense NGS Analysis Software User Guides
This tutorial illustrates how the SeqSense Analysis Toolkit is used with the SEQuoia Complete Stranded RNA Library Prep Kit, and provides the necessary information, scripts, and libraries to analyze the SeqSense Complete RNA data.
This tutorial illustrates how the SeqSense Analysis Solution is used with the SEQuoia Complete Stranded RNA Library Prep Kit to analyze the SeqSense Complete RNA data.
SEQuoia and SeqSense NGS Analysis Workflow
SeqSense NGS Data Analysis provides a bioinformatics pipeline uniquely optimized for mapping, aligning, counting, and normalizing reads generated from libraries containing both short and long RNA. Based on the STAR ultrafast universal RNA-seq aligner (Dobin 2013), the SeqSense RNA-Seq data analysis pipeline was designed to leverage the differentiated capabilities of the SEQuoia Complete Stranded RNA Library Prep Kit.
RNA-Seq Library Construction
SEQuoia Complete Stranded RNA Library Prep Kit with Thermal Cycling
Illumina NGS Platforms
Data Analysis Pipeline
Reporting & Visualization
SeqSense Analysis Solutions & Toolkit
NGS Data Analysis Resources
The Power of SEQzyme
Discover how SEQzyme, a proprietary, engineered retrotransposon efficiently captures all types and sizes of RNA species in a novel enzymatic reaction, significantly improving the diversity and quality of RNA libraries, even from limited or degraded RNA samples.
Learn how the new SEQuoia Complete Stranded RNA Library Prep Kit efficiently captures both long RNA and short RNAs less than 200 bp from all sample types, including limited or degraded RNA samples using a rapid, efficient, and sensitive workflow.
Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29(1):15–21. doi:10.1093/bioinformatics/bts635 PMCID: PMC3530905
High-performance RNA-Seq kit that captures long and short RNAs in a single library.
Effectively eliminates ribosomal RNA and mitochondrial ribosomal RNA sequences from an RNA-Seq library.
Personal units and flexible modular thermal cyclers provide low- to high-throughput capabilities for all your PCR amplification needs
A large selection of thin-wall polypropylene PCR tubes, PCR plates, seals, and accessories precisely manufactured for various PCR applications
Single-Cell NGS Sample Preparation
The ddSEQ Single-Cell Isolator is part of the Illumina Bio-Rad Single-Cell Sequencing Solution, the most comprehensive NGS workflow for single-cell gene expression studies.
Highly sensitive, single-cell ATAC-Seq assay for genome-wide open chromatin interrogation.
Robust and scalable solution that allows transcriptome profiling of single cells.