SEQuoia RiboDepletion Kit
Retain rare transcripts, and get the most from your sequencing
samples with the SEQuoia RiboDepletion Kit.

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SeqSense NGS Data Analysis Options | SEQuoia and SeqSense NGS Data Analysis Workflow | NGS Data Analysis Resources | Related Products |
SeqSense NGS Data Analysis is a purpose-built workflow for analyzing and visualizing the next-generation sequencing (NGS) data produced using the SEQuoia Complete Stranded RNA Library Prep Kit.
SeqSense NGS Data Analysis Software Options
SeqSense Analysis is available in two options to work online, as a web application, or deployed locally, using your own infrastructure, through a Docker container. Both versions use FASTQ files as input for secondary analysis, using the same underlying pipeline, and can produce BAM files, count matrices, and reports as output for tertiary analysis.
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SEQuoia Analysis Toolkit
Docker ContainerDownloadable SEQuoia Analysis Toolkit Docker Container with command line scripts and libraries.
Download SEQuoia Complete -
SEQuoia Express Docker
ContainerDownloadable SEQuoia Express Docker Container with command line scripts and libraries.
Download SEQuoia Express -
SeqSense Analysis Solution
Web AppThe SeqSense Web Application allows you to view, manage, and analyze your FASTQ sample files online.
Use SeqSense Web App Use the SeqSense Web App
SEQuoia and SeqSense NGS Analysis Software Documents
SEQuoia Complete Analysis Toolkit User Guide (494 KB)
This tutorial illustrates how the SEQuoia Complete Analysis Toolkit is used with the SEQuoia Complete Stranded RNA Library Prep Kit, and provides the necessary information, scripts, and libraries to analyze the SeqSense Complete RNA data.
SeqSense Analysis Solution Web Application User Guide (691 KB)
This tutorial illustrates how the SeqSense Analysis Solution is used with the SEQuoia Complete Stranded RNA Library Prep Kit to analyze the SeqSense Complete RNA data.
SEQuoia Express Analysis Toolkit User Guide (520 KB)
This tutorial illustrates how SEQuoia Express Analysis Toolkit is used with the SEQuoia Express Stranded RNA Library Prep Kit.
SeqSense Analysis Solution Web Application Release Notes (520 KB)
These release notes summarize new features of the SeqSense that supports both SEQuoia Express Stranded RNA Library Kit and the SEQuoia Complete Stranded RNA Library Kit.
SEQuoia Express Analysis Toolkit FAQ
(107 KB)The information in the document is intended to answer specific questions that have been received regarding the SEQuoia Express Analysis Toolkit and SeqSense Analysis Solution applications.
SeqSense Analysis Solution Web Application FAQs (453 KB)
The information in the document is intended to answer specific questions that have been received regarding the SEQuoia Express Analysis Toolkit and SeqSense Analysis Solution applications.
SEQuoia and SeqSense NGS Analysis Workflow
SeqSense NGS Data Analysis provides a bioinformatics pipeline uniquely optimized for mapping, aligning, counting, and normalizing reads generated from libraries containing both short and long RNA. Based on the STAR ultrafast universal RNA-seq aligner (Dobin 2013), the SeqSense RNA-Seq data analysis pipeline was designed to leverage the differentiated capabilities of the SEQuoia Complete Stranded RNA Library Prep Kit.
RNA-Seq Library Construction
SEQuoia Complete Stranded RNA Library Prep Kit with Thermal Cycling
Sequencing
Illumina NGS Platforms
Data Analysis Pipeline
SeqSense Pipeline
Reporting & Visualization
SeqSense Analysis Solutions & Toolkit
NGS Data Analysis Resources
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The Power of SEQzyme
Discover how SEQzyme, a proprietary, engineered retrotransposon efficiently captures all types and sizes of RNA species in a novel enzymatic reaction, significantly improving the diversity and quality of RNA libraries, even from limited or degraded RNA samples.
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Revolutionizing Transcriptomics
Learn how the new SEQuoia Complete Stranded RNA Library Prep Kit efficiently captures both long RNA and short RNAs less than 200 bp from all sample types, including limited or degraded RNA samples using a rapid, efficient, and sensitive workflow.
Citations
Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29(1):15–21. doi:10.1093/bioinformatics/bts635 PMCID: PMC3530905
Related Products
SEQuoia Complete Stranded RNA Library Prep Kit
High-performance RNA-Seq kit that captures long and short RNAs in a single library.
SEQuoia RiboDepletion Kit
Effectively eliminates ribosomal RNA and mitochondrial ribosomal RNA sequences from an RNA-Seq library.
Thermal Cyclers for PCR
Personal units and flexible modular thermal cyclers provide low- to high-throughput capabilities for all your PCR amplification needs
PCR Plastic Consumables
A large selection of thin-wall polypropylene PCR tubes, PCR plates, seals, and accessories precisely manufactured for various PCR applications
Single-Cell NGS Sample Preparation
Instruments
ddSEQ Single-Cell Isolator
The ddSEQ Single-Cell Isolator is part of the Bio-Rad Single-Cell Sequencing Solution for single-cell chromatin accessibility studies.
Kits
SureCell ATAC-Seq Library Prep Kit
Highly sensitive, single-cell ATAC-Seq assay for genome-wide open chromatin interrogation.