SARS-CoV-2 Variant Assays for ddPCR and RT-PCR Selector

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Use the Variant and Gene filters to select single-mutation assays for a SARS-CoV-2 variant of interest or mutliple-mutation assay panels for a specific group of variant-associated mutations. More Information >>

 

Showing 70 Assays

Nucleotide Mutation Amino Acid Mutation ddPCR Assay RT-PCR Assay
22992G>A, 22995C>A
 S477N_T478K Not available qSC2Mut0020233
23525C>T
 H655Y dMDS756294649 Not available
22992G>A
 S477N dMDS132328032 Not available
22578G>A
 G339D dMDS682550858 Not available
23203C>A
 T547K dMDS546396945 Not available
23854C>A
 N764K dMDS761081950 Not available
23948G>T
 D796Y dMDS837638261 Not available
24130C>A
 N856K dMDS900687606 Not available
 
 LPPA24S dMDS737327537 Not available
21618C>T
 T19I dMDS555254149 Not available
23673C>T
 S704L dMDS136340835 Not available
23063A>T, 22813G>T, 23012G>A, 23012G>C, 23063A>T, 22917T>G
Multiple Mutation Assay Panel 1: K417N, L452R, E484K/Q, and N501Y
 Not available qSC2Mut0020220
23063A>T, 23063A>T, 22995C>A, 22917T>G, 22812A>C
Multiple Mutation Assay Panel 2: K417T, L452R, T478K, N501Y
 Not available qSC2Mut0020223
28280 GAT>CTA
 D3L dMDS357586786 qSC2Mut0020204
28977C>T
 S235F dMDS440038136 qSC2Mut0020205
3267C>T
 T1001I dMDS337202764 qSC2Mut0020200
5388C>A
 A1708D dMDS139995162 qSC2Mut0020198
6954T>C
 I2230T Not available Not available
11288-11296 deletion
 SGF 3675-3677 deletion dMDS375805449 qSC2Mut0020199
27972C>T
 Q27 stop dMDS684178543 qSC2Mut0020201
28048G>T
 R52I dMDS217054602 qSC2Mut0020202
28111A>G
 Y73C dMDS360594022 qSC2Mut0020203
21765-21770 deletion
 HV 69-70 deletion dMDS944624402 qSC2Mut0020193
21991-21993 deletion
 Y144 deletion dMDS429435076 qSC2Mut0020197
23063A>T
 N501Y dMDS731762551 qSC2Mut0020219
23271C>A
 A570D dMDS853545728 qSC2Mut0020191
23604C>A
 P681H dMDS847708889 qSC2Mut0020194
23709C>T
 T716I dMDS468536809 qSC2Mut0020196
24506T>G
 S982A dMDS869413688 qSC2Mut0020195
24914G>C
 D1118H dMDS605463947 qSC2Mut0020192
 
SARS-CoV-2 S Gene Alpha Variant Control
 COVA COVA
22882T>A
 N440K dMDS514195527 Not available
22882T>G
 N440K dMDS894386716 Not available
22813G>T, 22917T>G, 22995C>A, 23031T>C
Multiple Mutation Assay Panel 3: K417N, L452R, T478K, F490S
 Not available qSC2Mut0020232
26456C>T
 P71L dMDS660665257 qSC2Mut0020216
28887C>T
 T205I dMDS759245237 qSC2Mut0020213
1059C>T
 T265I dMDS501248615 qSC2Mut0020212
5230G>T
 K1655N dMDS360434193 qSC2Mut0020210
10323A>G
 K3353R dMDS867807078 qSC2Mut0020211
25563G>T
 Q57H dMDS290356659 Not available
25904C>T
 S171L dMDS413789282 qSC2Mut0020215
21801A>C
 D80A dMDS275239390 qSC2Mut0020207
22813G>T
 K417N dMDS817055273 qSC2Mut0020209
23012G>A
 E484K dMDS661453998 qSC2Mut0020208
23012G>C
 E484Q dMDS407172175 qSC2Mut0020221
23664C>T
 A701V dMDS717219297 qSC2Mut0020206
 
SARS-CoV-2 S Gene Beta Variant Control
 COVB COVB
22907T>C
 Y449H dMDS514710681 Not available
24138C>A
 T859N dMDS603660596 Not available
29402G>T
 D377Y dMDS154696058 Not available
22995C>A
 T478K dMDS189046990 qSC2Mut0020222
23604C>G
 P681R dMDS696550979 qSC2Mut0020225
21846C>T
 T95I dMDS827497197 qSC2Mut0020229
24010G>A
 D950N dMDS752667135 qSC2Mut0020230
 
SARS-CoV-2 S Gene Delta-Kappa Variants Control
 COVDK COVDK
22917T>G
 L452R dMDS983315944 qSC2Mut0020218
22018G>T
 W152C dMDS204963366 Not available
 
SARS-CoV-2 S Gene Epsilon Variant Control
 COVE COVE
 
 A12G dMDS265730582 Not available
23593G>T
 Q677H dMDS530720961 Not available
22812A>C
 K417T dMDS673301504 qSC2Mut0020217
25088G>T
 V1176F dMDS767776914 Not available
 
SARS-CoV-2 S Gene Gamma Variant Control
 COVG COVG
 
 D63G dMDS955512631 Not available
21618C>G
 T19R dMDS657809058 Not available
23031T>C
 F490S dMDS614146070 Not available
22917T>A
 L452Q dMDS837383308 Not available
22599G>A
 R346K dMDS351104554 qSC2Mut0020231
21995T>A
 Y145N dMDS670659197 Not available
24138C>A
 T859I dMDS972893553 Not available