On This Page |
Sample Preparation with Chelex 100 |
RNA Sample Preparation for COVID-19 Testing |
Ordering Information | Further Reading |
Chelex Chelating Resins are produced by Bio-Rad and widely used for a range of applications.* Chelex 100 Resin has long been trusted for the preparation of DNA from many sample types for molecular detection. Recently, researchers have used Chelex 100 Resin for rapid RNA preparation for COVID-19 testing instead of conventional RNA extraction kits.
Streamline PCR or LAMP Sample Preparation with Chelex 100 Resin
Molecular diagnostics is increasingly important for routine detection of infectious diseases and to inform public health decisions. The COVID-19 pandemic illustrates the importance of large-scale testing in tracking and controlling the spread of disease. Such large-scale testing can create capacity challenges due to shortages of testing materials, ultimately hampering public health efforts. Detection of COVID-19 primarily relies on PCR amplification of SARS-CoV-2 viral RNA extracted from clinical samples. In response to a shortage of RNA extraction kits, researchers are using Chelex 100 Resin for sample preparation to develop rapid and more cost-effective COVID-19 testing workflows than possible with conventional RNA extraction kits.
Application of Chelex 100 Resin in Pathogen Detection
Molecular diagnosis of infectious diseases often relies on the detection of specific nucleotide sequences in DNA or RNA isolated from a sample containing a pathogen. Chelex 100 Resin can be utilized for sample preparation in place of traditional DNA or RNA extraction kits.
Advantages of Chelex 100 Resin for nucleic acid sample preparation:
- Fast, simple workflow
- Significant cost-savings over nucleic acid extraction kits
- Long shelf life (3 years**)
- Trusted manufacturer
- Scalable for high-throughput screening
Chelex 100 Resin Inhibits Nuclease Activity
Chelex 100 Resin is designed to strongly bind divalent metal ions such as Mg2+ that are required for the activity of metallo-nucleases. The addition of Chelex 100 effectively inhibits nuclease activity in complex samples and stabilizes samples for downstream PCR applications. Simultaneously, Chelex 100 Resin efficiently removes PCR inhibitors. Thus, Chelex 100 can be utilized in place of expensive DNA or RNA extraction kits for molecular diagnostics testing.
Sample Preparation Workflow
Chelex 100 Resin enables DNA or RNA preparations from complex samples without DNA or RNA extraction kits. A fast, simple four-step workflow is typically sufficient for the preparation of nucleic acids from a wide variety of sample types. Additional reagents can easily be combined with Chelex 100 if required for the specific sample/application.
RNA Sample Preparation for COVID-19 Testing with Chelex 100 Resin
Chelex 100 Resin has long been used for fast, easy DNA preparation from many sample types including forensic samples, blood, tissues, parasites, insects, and bacteria (see Further Reading section). Driven by supply issues in the COVID-19 pandemic, Chelex 100 Resin is now increasingly considered for RNA preparation for COVID-19 testing. See these publications to learn how laboratories can use Chelex 100 Resin to prepare RNA from clinical samples for SARS-CoV-2 RT-PCR assays, providing a faster rapid and more cost-effective COVID-19 testing workflow.
Featured Articles: Application of Chelex 100 Resin for SARS-CoV-2 RNA Sample Preparation
Sensitive extraction-free SARS-CoV-2 RNA virus detection using a novel RNA preparation method
Guan B et al. medRxiv 2021.01.29.21250790. DOI: 10.1101/2021.01.29.21250790
A simple method for SARS-CoV-2 detection by rRT-PCR without the use of a commercial RNA extraction kit.
Ulloa S et al. J Virol Methods. 2020 Nov;285:113960. DOI: 10.1016/j.jviromet.2020.113960.
A simple direct RT-LAMP SARS-CoV-2 saliva diagnostic.
Flynn MJ et al. medRxiv 2020.11.19.20234948; DOI: 10.1101/2020.11.19.20234948
Preliminary optimisation of a simplified sample preparation method to permit direct detection of SARS-CoV-2 within saliva samples using reverse-transcription loop-mediated isothermal amplification (RT-LAMP).
Howson E et al. J Virol Methods. 2020 Nov; 114048. DOI: 10.1016/j.jviromet.2020.114048
Ordering Information
Chelex 100 (Molecular Biology Grade)
50 g, molecular biology grade cation exchange resin, sodium form, 1% crosslinkage, 200–400 dry mesh size, 75–150 µm wet bead size, ~3,500 MW limit.
Order NowPlacing a large order? Please contact us for more details.
Further Reading: Chelex 100 Resin-Based DNA and RNA Preparation
Coombs NJ et al. Optimisation of DNA and RNA extraction from archival formalin-fixed tissue.
Nucleic Acids Res. 1999 27(16): e1227:e12. DOI: 10.1093/nar/27.16.e12
Cressier B, Bissonnette N. Assessment of an extraction protocol to detect the major mastitis-causing pathogens in bovine milk.
Journal of Dairy Science, 2011 Volume 94, Issue 5, 2171-2184 DOI: 10.3168/jds.2010-3669
Hale AD et al. Comparison of four RNA extraction methods for the detection of small round structured viruses in faecal specimens.
J Virol Methods. 1996 Apr 5;57(2):195-201. DOI: 10.1016/0166-0934(95)01966-9
Kolia-Diafouka P et al. Optimized Lysis-Extraction Method Combined with IS6110-Amplification for Detection of Mycobacterium tuberculosis in Paucibacillary Sputum Specimens.
Front Microbiol. 2018 Sep 25;9:2224. DOI: 10.3389/fmicb.2018.02224
Lee RA et al. Ultrasensitive CRISPR-based diagnostic for field-applicable detection of Plasmodium species in symptomatic and asymptomatic malaria Proc Natl Acad Sci U S A.
2020 Oct 13;117(41):25722-25731. DOI: 10.1073/pnas.2010196117
Lienhard A and Sch?ffer S. Extracting the invisible: obtaining high quality DNA is a challenging task in small arthropods.
PeerJ. 2019 Apr 12;7:e6753. DOI: 10.7717/peerj.6753
Musapa M et al. A simple Chelex protocol for DNA extraction from Anopheles spp.
J Vis Exp. 2013 Jan 9;(71):3281. DOI: 10.3791/3281
Mygind T et al. Determination of PCR efficiency in Chelex 100-purified clinical samples and comparison of real-time quantitative PCR and conventional PCR for detection of Chlamydia pneumoniae.
BMC Microbiol. 2002 Jul 9;2:17. DOI: 10.1186/1471-2180-2-17
Nouemssi SB et al. Rapid and Efficient Colony-PCR for High Throughput Screening of Genetically Transformed Chlamydomonas reinhardtii.
Life (Basel). 2020 Sep 10;10(9):186. DOI: 10.3390/life10090186
Simon N et al. Optimization of Chelex 100 resin-based extraction of genomic DNA from dried blood spots.
Biol Methods Protoc. 2020 May 2;5(1):bpaa009. DOI: 10.1093/biomethods/bpaa009
Thatcher SA. DNA/RNA Preparation for Molecular Detection.
Clinical Chemistry, Volume 61, Issue 1, 1 January 2015, Pages 89–99. DOI: 10.1373/clinchem.2014.221374
Tomasek O et al. Comparison of three template preparation methods for routine detection of beak and feather disease virus and avian polyomavirus with single and nested polymerase chain reaction in clinical specimens.
Avian Pathol. 2008 Apr;37(2):145-9. DOI: 10.1080/03079450801902047
Walsh PS et al. Chelex 100 as a Medium for Simple Extraction of DNA for PCR-Based Typing from Forensic Material.
Biotechniques 2013 Mar;54(3):134-9. DOI: 10.2144/000114018
* Chelex is a registered trademark of Bio-Rad Laboratories, Inc.
** Molecular biology grade Chelex 100