Gene:  PCDH9, Human

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PrimePCR Primer Assays for Real-Time PCR oligo primer pair gene expression assay target

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This gene belongs to the protocadherin gene family a subfamily of the cadherin superfamily. The mRNA encodes a cadherin-related neuronal receptor that localizes to synaptic junctions and is putatively involved in specific neuronal connections and signal transduction. Sharing a characteristic with other protocadherin genes this gene has a notably large exon that encodes six cadherin domains and a transmembrane region. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq Feb 2009]

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PrimePCR™ SYBR® Green Assay: PCDH9, Human
protocadherin 9

Assay Type: SYBR® Green
Assay Design: exonic
Application: Gene Expression
Unique Assay ID: qHsaCED0047655
Info:   Recommended - best coverage; Same primer pair as used in probe assay qHsaCEP0054915
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PrimePCR™ SYBR® Green Assay: PCDH9, Human
protocadherin 9

Assay Type: SYBR® Green
Assay Design: Intron-spanning
Application: Gene Expression
Unique Assay ID: qHsaCID0012354
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PrimePCR™ Probe Assay: PCDH9, Human
protocadherin 9

Assay Type: Probe
Assay Design: exonic
Application: Gene Expression
Unique Assay ID: qHsaCEP0054915
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PrimePCR™ ddPCR™ Expression EvaGreen® Assay: PCDH9, Human
protocadherin 9

Assay Type: EvaGreen
Application: Gene Expression
Unique Assay ID: dHsaEG5011966
Info:   EG; Same primer pair as used in qPCR assay qHsaCED0047655; exonic
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PrimePCR™ ddPCR™ Expression EvaGreen® Assay: PCDH9, Human
protocadherin 9

Assay Type: EvaGreen
Application: Gene Expression
Unique Assay ID: dHsaEG5018575
Info:   EG; Same primer pair as used in qPCR assay qHsaCID0012354; Intron-spanning
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PrimePCR™ ddPCR™ Copy Number Assay: PCDH9, Human
protocadherin 9

Assay Type: Probe
Application: Copy Number Variation
Unique Assay ID: dHsaCP2500296
Info:   FAM; 65nt amplicon; exonic; FAM version of PCDH9 (dHsaCP2506474)
 
Fluorophore:   FAM
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PrimePCR™ ddPCR™ Copy Number Assay: PCDH9, Human
protocadherin 9

Assay Type: Probe
Application: Copy Number Variation
Unique Assay ID: dHsaCP2506474
Info:   HEX; 65nt amplicon; exonic; HEX version of PCDH9 (dHsaCP2500296)
 
Fluorophore:   HEX
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PrimePCR™ ddPCR™ Expression Probe Assay: PCDH9, Human
protocadherin 9

Assay Type: Probe
Application: Gene Expression
Unique Assay ID: dHsaCPE5042242
Info:   FAM; Same primer pair and probe as used in qPCR assay qHsaCEP0054915; exonic
 
Fluorophore:   FAM
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PrimePCR™ ddPCR™ Expression Probe Assay: PCDH9, Human
protocadherin 9

Assay Type: Probe
Application: Gene Expression
Unique Assay ID: dHsaCPE5042243
Info:   HEX; Same primer pair and probe as used in qPCR assay qHsaCEP0054915; exonic
 
Fluorophore:   HEX
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PrimePCR™ ddPCR™ Mutation Assay:PCDH9 p.N1014S, Human
protocadherin 9

Assay Type: Probe
Application: Mutation Detection in silico design
Unique Assay ID: dHsaIS2505120
Info:   99nt amplicon; crosses exon-intron junction; in silico
 
Fluorophore:   FAM
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PrimePCR™ ddPCR™ Mutation Assay:PCDH9 WT for p.N1014S, Human
protocadherin 9

Assay Type: Probe
Application: Mutation Detection in silico design
Unique Assay ID: dHsaIS2505121
Info:   99nt amplicon; crosses exon-intron junction; in silico
 
Fluorophore:   HEX
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    Related pathways not available
Number Description Download
6262 PrimePCR Assays: Meeting the MIQE Guidelines by Full Wet-Lab Validation, Rev B Click to download
6263 PrimePCR Pathway Analysis: Pathway Curation and Real-Time PCR Panel Design Strategy, Rev B Click to download
6290 PrimePCR Assays and Panels Brochure, Rev D Click to download
LIT10026370 Instruction Manual, PrimePCR Assays, Panels, and Controls, Rev E Click to download
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