PrimePCR™ SYBR® Green Assay: NSD1, Human

PrimePCR Primer Assays for Real-Time PCR oligo primer pair tube for SYBR Green gene expression

Real-time PCR primer assay designed for SYBR® Green gene expression analysis.

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Assay Information

Technology:   qPCR
Assay Type:   SYBR® Green
Application:   Gene Expression
Unique Assay ID:   qHsaCID0006715
Assay Design:   Intron-spanning
Chromosome Location:   5:176694599-176696661question
Amplicon Length:   150
Splice Variants Targeted:   ENST00000439151 ENST00000347982 ENST00000508029 ENST00000503056 ENST00000504457 ENST00000505395 ENST00000515735 ENST00000361032 ENST00000354179

Gene Information

This gene encodes a protein containing a SET domain 2 LXXLL motifs 3 nuclear translocation signals (NLSs) 4 plant homeodomain (PHD) finger regions and a proline-rich region. The encoded protein enhances androgen receptor (AR) transactivation and this enhancement can be increased further in the presence of other androgen receptor associated coregulators. This protein may act as a nucleus-localized basic transcriptional factor and also as a bifunctional transcriptional regulator. Mutations of this gene have been associated with Sotos syndrome and Weaver syndrome. One version of childhood acute myeloid leukemia is the result of a cryptic translocation with the breakpoints occurring within nuclear receptor-binding Su-var enhancer of zeste and trithorax domain protein 1 on chromosome 5 and nucleoporin 98-kd on chromosome 11. Two transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq Jul 2008]

Gene Symbol:   NSD1
Gene Name:   nuclear receptor binding SET domain protein 1
Aliases:   ARA267, DKFZp666C163, FLJ10684, FLJ22263, FLJ44628, KMT3B, SOTOS, STO
RefSeq:   NC_000005.9 NG_009821.1 NT_023133.13
Ensembl:   ENSG00000165671
Entrez:   64324
UniGene:   Hs.106861
Chromosome Mapping:   5q35

The below validation information is for the Primer Pair only   Download Validation Data (.pdf)

Products used to generate validation data:

Real-Time PCR Instrument CFX384 Real-Time PCR Detection System
Reverse Transcription Reagent iScript™ Advanced cDNA Synthesis Kit for RT-qPCR
Real-Time PCR Supermix SsoAdvanced™ SYBR® Green Supermix
Experimental Sample qPCR Human Reference Total RNA

Summary Data:

R2 0.999200
y-intercept 35.400000
Efficiency 96

Amplification Plot
Amplification of cDNA generated from universal RNA.

Amplification of cDNA generated from universal RNA.

Melt Peak
Melt curve analysis of above amplification.

Melt curve analysis of above amplification.

Standard Curve
Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

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