PrimePCR™ Probe Assay: FMR1, Human

RT

Real-time PCR probe assay designed for gene expression analysis. Probe assays consist of unlabeled PCR primers and a dual labeled fluorescent probe.

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Assay Information

Technology:   qPCR
Assay Type:   Probe
Application:   Gene Expression
Unique Assay ID:   qHsaCEP0050168
Assay Design:   exonic
Chromosome Location:   X:147013948-147014096question
Amplicon Length:   119
Splice Variants Targeted:   ENST00000370477 ENST00000334557 ENST00000439526 ENST00000370475 ENST00000370470 ENST00000218200 ENST00000370471 ENST00000440235 ENST00000599356 ENST00000596189 ENST00000600585 ENST00000594931 ENST00000593982 ENST00000602057 ENST00000599497 ENST00000597486

Gene Information

The protein encoded by this gene binds RNA and is associated with polysomes. The encoded protein may be involved in mRNA trafficking from the nucleus to the cytoplasm. A trinucleotide repeat (CGG) in the 5' UTR is normally found at 6-53 copies but an expansion to 55-230 repeats is the cause of fragile X syndrome. Expansion of the trinucleotide repeat may also cause one form of premature ovarian failure (POF1). Multiple alternatively spliced transcript variants that encode different protein isoforms and which are located in different cellular locations have been described for this gene. [provided by RefSeq May 2010]

Gene Symbol:   FMR1
Gene Name:   fragile X mental retardation 1
Aliases:   FMRP, FRAXA, MGC87458, POF, POF1
RefSeq:   NC_000023.10 NT_011681.16 NG_007529.1
Ensembl:   ENSG00000102081
Entrez:   2332
UniGene:   Hs.103183
Chromosome Mapping:   Xq27.3

The below validation information is for the Primer Pair only   Download Validation Data (.pdf)


Products used to generate validation data:

Real-Time PCR Instrument CFX384 Real-Time PCR Detection System
Reverse Transcription Reagent iScript™ Advanced cDNA Synthesis Kit for RT-qPCR
Real-Time PCR Supermix SsoAdvanced™ Universal SYBR® Green Supermix
Experimental Sample qPCR Human Reference Total RNA

Summary Data:

R2 0.999600
y-intercept 36.130000
Efficiency 96

Amplification Plot
Amplification of cDNA generated from universal RNA.

Amplification of cDNA generated from universal RNA.

Melt Peak
Melt curve analysis of above amplification.

Melt curve analysis of above amplification.

Standard Curve
Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

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