PrimePCR™ SYBR® Green Assay: PYM, Arabidopsis

PrimePCR Primer Assays for Real-Time PCR oligo primer pair tube for SYBR Green gene expression

Real-time PCR primer assay designed for SYBR® Green gene expression analysis.

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Assay Information

Technology:   qPCR
Assay Type:   SYBR® Green
Application:   Gene Expression
Unique Assay ID:   qAthCED0050014
Assay Design:   Exonic
Chromosome Location:   1:3838719-3838843question
Amplicon Length:   95
Splice Variants Targeted:   AT2G23370.1 AT1G11400.1 AT1G11400.2 AT1G11400.3

Gene Information

The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.

Gene Symbol:   PYM
Gene Name:   Partner of Y14-MAGO
Aliases:   Not Available
RefSeq:   NM_179308 NM_101013 NM_001035946
Ensembl:   AT1G11400
Entrez:   837682
UniGene:   At.42135
Chromosome Mapping:   Not Available

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