PrimePCR™ SYBR® Green Assay: SCD5, Human

PrimePCR Primer Assays for Real-Time PCR oligo primer pair tube for SYBR Green gene expression

Real-time PCR primer assay designed for SYBR® Green gene expression analysis.

Info:   Same primer pair as used in probe assay qHsaCIP0028087

List Price:    $134.00
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Assay Information

Technology:   qPCR
Assay Type:   SYBR® Green
Application:   Gene Expression
Unique Assay ID:   qHsaCID0011572
Assay Design:   Intron-spanning
Chromosome Location:   4:83626440-83719487question
Amplicon Length:   126
Splice Variants Targeted:   ENST00000319540 ENST00000273908 ENST00000282709

Gene Information

Stearoyl-CoA desaturase (SCD; EC 1.14.99.5) is an integral membrane protein of the endoplasmic reticulum that catalyzes the formation of monounsaturated fatty acids from saturated fatty acids. SCD may be a key regulator of energy metabolism with a role in obesity and dislipidemia. Four SCD isoforms Scd1 through Scd4 have been identified in mouse. In contrast only 2 SCD isoforms SCD1 (MIM 604031) and SCD5 have been identified in human. SCD1 shares about 85% amino acid identity with all 4 mouse SCD isoforms as well as with rat Scd1 and Scd2. In contrast SCD5 shares limited homology with the rodent SCDs and appears to be unique to primates (Wang et al. 2005 [PubMed 15907797]).[supplied by OMIM Mar 2008]

Gene Symbol:   SCD5
Gene Name:   stearoyl-CoA desaturase 5
Aliases:   ACOD4, FADS4, FLJ21032, HSCD5, SCD2, SCD4
RefSeq:   NC_000004.11 NT_016354.19
Ensembl:   ENSG00000145284
Entrez:   79966
UniGene:   Hs.379191
Chromosome Mapping:   4q21.22

The below validation information is for the Primer Pair only   Download Validation Data (.pdf)


Products used to generate validation data:

Real-Time PCR Instrument CFX384 Real-Time PCR Detection System
Reverse Transcription Reagent iScript™ Advanced cDNA Synthesis Kit for RT-qPCR
Real-Time PCR Supermix SsoAdvanced™ SYBR® Green Supermix
Experimental Sample qPCR Human Reference Total RNA

Summary Data:

R2 0.999100
y-intercept 35.010000
Efficiency 103

Amplification Plot
Amplification of cDNA generated from universal RNA.

Amplification of cDNA generated from universal RNA.

Melt Peak
Melt curve analysis of above amplification.

Melt curve analysis of above amplification.

Standard Curve
Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

Number Description Download
6262 PrimePCR Assays: Meeting the MIQE Guidelines by Full Wet-Lab Validation, Rev B Click to download
6263 PrimePCR Pathway Analysis: Pathway Curation and Real-Time PCR Panel Design Strategy, Rev B Click to download
6290 PrimePCR Assays and Panels Brochure, Rev D Click to download
LIT10026370 Instruction Manual, PrimePCR Assays, Panels, and Controls, Rev E Click to download
10039761 PrimePCR™ Assays Quick Guide, Ver B Click to download