PrimePCR™ SYBR® Green Assay: HOGA1, Human

PrimePCR Primer Assays for Real-Time PCR oligo primer pair tube for SYBR Green gene expression

Real-time PCR primer assay designed for SYBR® Green gene expression analysis.

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Assay Information

Technology:   qPCR
Assay Type:   SYBR® Green
Application:   Gene Expression
Unique Assay ID:   qHsaCED0003853
Assay Design:   Exonic
Chromosome Location:   10:99372315-99372465question
Amplicon Length:   121
Splice Variants Targeted:   ENST00000370647 ENST00000370646

Gene Information

The authors of PMID:20797690 cloned this gene while searching for genes in a region of chromosome 10 linked to primary hyperoxalurea type III. They noted that even though the encoded protein has been described as a mitochondrial dihydrodipicolinate synthase-like enzyme it shares little homology with E. coli dihydrodipicolinate synthase (Dhdps) particularly in the putative substrate-binding region. Moreover neither lysine biosynthesis nor sialic acid metabolism for which Dhdps is responsible occurs in vertebrate mitochondria. They propose that this gene encodes mitochondrial 4-hydroxyl-2-oxoglutarate aldolase (EC which catalyzes the final step in the metabolic pathway of hydroxyproline releasing glyoxylate and pyruvate. This gene is predominantly expressed in the liver and kidney and mutations in this gene are found in patients with primary hyperoxalurea type III. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq Nov 2010]

Gene Symbol:   HOGA1
Gene Name:   4-hydroxy-2-oxoglutarate aldolase 1
Aliases:   C10orf65, DHDPS2, DHDPSL, FLJ37472, FLJ56960, HP3, NPL2
RefSeq:   NC_000010.10 NT_030059.13 NG_027922.1
Ensembl:   ENSG00000241935
Entrez:   112817
UniGene:   Hs.180346
Chromosome Mapping:   10q24.2

The below validation information is for the Primer Pair only   Download Validation Data (.pdf)

Products used to generate validation data:

Real-Time PCR Instrument CFX384 Real-Time PCR Detection System
Reverse Transcription Reagent iScript™ Advanced cDNA Synthesis Kit for RT-qPCR
Real-Time PCR Supermix SsoAdvanced™ SYBR® Green Supermix
Experimental Sample qPCR Human Reference Total RNA

Summary Data:

R2 0.997700
y-intercept 35.440000
Efficiency 101

Amplification Plot
Amplification of cDNA generated from universal RNA.

Amplification of cDNA generated from universal RNA.

Melt Peak
Melt curve analysis of above amplification.

Melt curve analysis of above amplification.

Standard Curve
Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

Standard curve generated using 20 million copies of template diluted 10 fold to 20 copies.

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